PH01001288G0390's details annotation
1.Annotation
ICBR annotation: citrate transporter, putative, expressed
Blast result AT5G47560 : 0.00E+00
Blast annotation: tonoplast dicarboxylate transporter
2.Location
Scaffold: PH01001288
Strand: +
| Region | Start | End |
| gene | 261170 | 264339 |
| mRNA | 261170 | 264339 |
| exon | 261170 | 261706 |
| exon | 261823 | 262318 |
| exon | 262541 | 262584 |
| exon | 262705 | 262800 |
| exon | 262894 | 263404 |
| exon | 263509 | 264339 |
| CDS | 261272 | 261706 |
| CDS | 261823 | 262318 |
| CDS | 262541 | 262584 |
| CDS | 262705 | 262800 |
| CDS | 262894 | 263404 |
| CDS | 263509 | 263543 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00939.18 | Na_sulph_symp | 65 | 532 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006814 | sodium ion transport |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.