PH01001289G0130's details annotation
1.Annotation
ICBR annotation: CAF1 family ribonuclease containing protein, putative, expressed
Blast result AT2G32070 : 2.00E-101
Blast annotation: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
2.Location
Scaffold: PH01001289
Strand: -
| Region | Start | End |
| gene | 74274 | 77275 |
| mRNA | 74274 | 77275 |
| exon | 74274 | 77275 |
| CDS | 74314 | 75174 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000198 | arginine decarboxylase activity, vesicle docking involved in exocytosis, spermidine biosynthetic process, arginine catabolic process, Endocytosis RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04857.19 | CAF1 | 22 | 141 |
| PF04857.19 | CAF1 | 164 | 244 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT transcription complex subunit 7/8 | ko03018 | K12581 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.