Annotation of co-expression genes

PH01001291G0390's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase 5 precursor, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01001291
Strand: -

RegionStartEnd
gene275867279664
mRNA275867279664
exon275867276148
exon276397276496
exon276807276856
exon277070279664
CDS276091276148
CDS276397276496
CDS276807276856
CDS277070277212

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000229GT2 GlycosylTransferases
NuA4_histone_acetyltransferase_complex
histone_H2A_acetylation
protein homooligomerization,
histone_H4_acetylation
chromatin remodeling,
negative_regulation_of_transcription,_DNA-templated
RNA modification,
pseudouridine synthesis,
coexpression networkCFinderM000758protein homooligomerization,
protein tyrosine/serine/threonine phosphatase activity,
protein tyrosine phosphatase activity,
phosphatase activity,
dephosphorylation,
protein dephosphorylation,
coexpression networkCFinderM000759protein homooligomerization,
Nucleotide_excision_repair
Mismatch_repair
DNA_replication
DNA_replication
coexpression networkCFinderM000791condensin_complex
GT1 GlycosylTransferases
ferric iron binding,
mitotic_chromosome_condensation
iron-sulfur cluster assembly,
binding,
protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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