PH01001295G0130's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT5G45580 : 2.20E-44
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01001295
Strand: -
| Region | Start | End |
| gene | 112482 | 117585 |
| mRNA | 112482 | 117585 |
| exon | 112482 | 113046 |
| exon | 113888 | 113980 |
| exon | 114039 | 114099 |
| exon | 114262 | 114337 |
| exon | 114472 | 114529 |
| exon | 114647 | 114723 |
| exon | 115260 | 117585 |
| CDS | 112630 | 113046 |
| CDS | 113888 | 113980 |
| CDS | 114039 | 114099 |
| CDS | 114262 | 114337 |
| CDS | 114472 | 114529 |
| CDS | 114647 | 114723 |
| CDS | 115260 | 115389 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GARP-G2-like |
| Transcription_Regulator(from PlantTFDB) | G2-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 21 | 72 |
| PF14379.5 | Myb_CC_LHEQLE | 165 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.