Annotation of co-expression genes

PH01001297G0340's details annotation

1.Annotation

ICBR annotation: phosphoribosyl transferase, putative, expressed

Blast result AT2G44530 : 1.00E-104
Blast annotation: Phosphoribosyltransferase family protein

2.Location

Scaffold: PH01001297
Strand: +

RegionStartEnd
gene245811256198
mRNA245811256198
exon245811246254
exon246698246889
exon247260247508
exon248241248384
exon248508248672
exon248998249067
exon250788250947
exon253578253689
exon255000255242
exon255378256198
CDS246234246254
CDS246698246889
CDS247260247508
CDS248241248384
CDS248508248672
CDS248998249067
CDS250788250947
CDS253578253689
CDS255000255242
CDS255378255809

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13793.5Pribosyltran_N58174
PF00156.26Pribosyltran209280
PF12056.7DUF3537373452
PF03087.13DUF241439594

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Pentose phosphate pathwayribose-phosphate pyrophosphokinase [EC:2.7.6.1]ko00030K00948
Purine metabolismribose-phosphate pyrophosphokinase [EC:2.7.6.1]ko00230K00948

10.Gene Ontology

GO AccessionGO Annotation
GO:0000287magnesium ion binding
GO:0004749ribose phosphate diphosphokinase activity
GO:0009116nucleoside metabolic process
GO:0009156ribonucleoside monophosphate biosynthetic process
GO:0009165nucleotide biosynthetic process
GO:0044249cellular biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.