PH01001298G0250's details annotation
1.Annotation
ICBR annotation: thioredoxin, putative, expressed
Blast result AT5G42980 : 1.50E-32
Blast annotation: thioredoxin 3
2.Location
Scaffold: PH01001298
Strand: -
| Region | Start | End |
| gene | 128646 | 130738 |
| mRNA | 128646 | 130738 |
| exon | 128646 | 129295 |
| exon | 129372 | 129494 |
| exon | 129793 | 129870 |
| exon | 130563 | 130738 |
| CDS | 129152 | 129295 |
| CDS | 129372 | 129494 |
| CDS | 129793 | 129870 |
| CDS | 130563 | 130646 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001249 | glycerol ether metabolic process, cell redox homeostasis, protein disulfide oxidoreductase activity, electron carrier activity, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00085.19 | Thioredoxin | 52 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006662 | glycerol ether metabolic process |
| GO:0009055 | electron carrier activity |
| GO:0015035 | protein disulfide oxidoreductase activity |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.