PH01001298G0400's details annotation
1.Annotation
ICBR annotation: uncharacterized protein ycf45, putative, expressed
Blast result AT3G10420 : 0.00E+00
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01001298
Strand: -
| Region | Start | End |
| gene | 261446 | 271749 |
| mRNA | 261446 | 271749 |
| exon | 261446 | 261920 |
| exon | 262379 | 262543 |
| exon | 262636 | 262812 |
| exon | 263189 | 263475 |
| exon | 263620 | 263782 |
| exon | 264105 | 264296 |
| exon | 264419 | 264569 |
| exon | 264764 | 264978 |
| exon | 265243 | 265678 |
| exon | 267154 | 267239 |
| exon | 267785 | 267882 |
| exon | 268457 | 268529 |
| exon | 269395 | 269495 |
| exon | 270517 | 271749 |
| CDS | 261618 | 261920 |
| CDS | 262379 | 262543 |
| CDS | 262636 | 262812 |
| CDS | 263189 | 263475 |
| CDS | 263620 | 263782 |
| CDS | 264105 | 264296 |
| CDS | 264419 | 264569 |
| CDS | 264764 | 264978 |
| CDS | 265243 | 265678 |
| CDS | 267154 | 267239 |
| CDS | 267785 | 267882 |
| CDS | 268457 | 268529 |
| CDS | 269395 | 269495 |
| CDS | 270517 | 270532 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 327 | 413 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.