PH01001300G0350's details annotation
1.Annotation
ICBR annotation: membrane related protein CP5, putative, expressed
Blast result AT1G64720 : 4.00E-125
Blast annotation: Polyketide cyclase/dehydrase and lipid transport superfamily protein
2.Location
Scaffold: PH01001300
Strand: +
| Region | Start | End |
| gene | 221687 | 225333 |
| mRNA | 221687 | 225333 |
| exon | 221687 | 222289 |
| exon | 222388 | 222556 |
| exon | 222791 | 222973 |
| exon | 223070 | 223153 |
| exon | 223771 | 223852 |
| exon | 223947 | 225333 |
| CDS | 222033 | 222289 |
| CDS | 222388 | 222556 |
| CDS | 222791 | 222973 |
| CDS | 223070 | 223153 |
| CDS | 223771 | 223852 |
| CDS | 223947 | 224389 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000409 | lipoxygenase activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, Jumonji Transcription_Regulator(from iTAK) iron ion binding, metal ion binding, oxidation-reduction process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.