PH01001300G0540's details annotation
1.Annotation
ICBR annotation: OsSub37 - Putative Subtilisin homologue, expressed
Blast result AT4G10540 : 4.30E-68
Blast annotation: Subtilase family protein
2.Location
Scaffold: PH01001300
Strand: +
| Region | Start | End |
| gene | 303066 | 309707 |
| mRNA | 303066 | 309707 |
| exon | 303066 | 303578 |
| exon | 304241 | 304269 |
| exon | 304709 | 305017 |
| exon | 305426 | 305496 |
| exon | 305598 | 305861 |
| exon | 306941 | 307070 |
| exon | 308393 | 308564 |
| exon | 308651 | 309707 |
| CDS | 303212 | 303578 |
| CDS | 304241 | 304269 |
| CDS | 304709 | 305017 |
| CDS | 305426 | 305496 |
| CDS | 305598 | 305861 |
| CDS | 306941 | 307070 |
| CDS | 308393 | 308564 |
| CDS | 308651 | 309183 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00082.21 | Peptidase_S8 | 113 | 462 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.