PH01001304G0330's details annotation
1.Annotation
ICBR annotation: growth regulating factor protein, putative, expressed
Blast result AT3G13960 : 4.10E-26
Blast annotation: growth-regulating factor 5
2.Location
Scaffold: PH01001304
Strand: -
| Region | Start | End |
| gene | 285389 | 288683 |
| mRNA | 285389 | 288683 |
| exon | 285389 | 286534 |
| exon | 286893 | 287117 |
| exon | 287953 | 288683 |
| CDS | 286218 | 286534 |
| CDS | 286893 | 287117 |
| CDS | 287953 | 288187 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRF |
| Transcription_Regulator(from PlantTFDB) | GRF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08880.10 | QLQ | 15 | 49 |
| PF08879.9 | WRC | 82 | 120 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.