Annotation of co-expression genes

PH01001305G0250's details annotation

1.Annotation

ICBR annotation: ABC transporter, ATP-binding protein, putative, expressed

Blast result AT3G47730 : 0.00E+00
Blast annotation: ATP-binding cassette A2

2.Location

Scaffold: PH01001305
Strand: -

RegionStartEnd
gene188440195211
mRNA188440195211
exon188440189109
exon189290189466
exon189545189625
exon190278190592
exon190675190818
exon190910190999
exon191088191164
exon191252191369
exon191450191676
exon191766191922
exon192010192210
exon192298192393
exon192574192759
exon192839193008
exon193237193468
exon194792195211
CDS188855189109
CDS189290189466
CDS189545189625
CDS190278190592
CDS190675190818
CDS190910190999
CDS191088191164
CDS191252191369
CDS191450191676
CDS191766191922
CDS192010192210
CDS192298192393
CDS192574192759
CDS192839193008
CDS193237193468
CDS194792195160

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000180transmembrane transport,
integral to membrane,
CAMK_AMPK (from iTAK)
GH100 Glycoside_Hydrolases
GH32 Glycoside_Hydrolases
Golgi membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12698.6ABC2_membrane_3208438
PF00005.26ABC_tran547690

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.