PH01001308G0210's details annotation
1.Annotation
ICBR annotation: soluble inorganic pyrophosphatase, putative, expressed
Blast result AT5G09650 : 2.00E-115
Blast annotation: pyrophosphorylase 6
2.Location
Scaffold: PH01001308
Strand: -
| Region | Start | End |
| gene | 150887 | 158674 |
| mRNA | 150887 | 158674 |
| exon | 150887 | 152675 |
| exon | 152762 | 152860 |
| exon | 156062 | 156243 |
| exon | 156341 | 156441 |
| exon | 158123 | 158674 |
| CDS | 152583 | 152675 |
| CDS | 152762 | 152860 |
| CDS | 156062 | 156243 |
| CDS | 156341 | 156441 |
| CDS | 158123 | 158496 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00719.18 | Pyrophosphatase | 91 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | inorganic pyrophosphatase [EC:3.6.1.1] | ko00190 | K01507 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0004427 | inorganic diphosphatase activity |
| GO:0005737 | cytoplasm |
| GO:0006796 | phosphate-containing compound metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.