PH01001313G0070's details annotation
1.Annotation
ICBR annotation: DNA binding protein, putative, expressed
Blast result AT1G53490 : 7.70E-92
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01001313
Strand: -
| Region | Start | End |
| gene | 41540 | 47566 |
| mRNA | 41540 | 47566 |
| exon | 41540 | 41849 |
| exon | 42126 | 42289 |
| exon | 42383 | 42663 |
| exon | 43035 | 43080 |
| exon | 43389 | 43461 |
| exon | 43867 | 43933 |
| exon | 45051 | 47566 |
| CDS | 41605 | 41849 |
| CDS | 42126 | 42289 |
| CDS | 42383 | 42663 |
| CDS | 43035 | 43080 |
| CDS | 43389 | 43461 |
| CDS | 43867 | 43933 |
| CDS | 45051 | 45122 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.