PH01001313G0120's details annotation
1.Annotation
ICBR annotation: clathrin adaptor complex small chain domain containing protein, expressed
Blast result AT2G17380 : 3.20E-82
Blast annotation: associated protein 19
2.Location
Scaffold: PH01001313
Strand: +
| Region | Start | End |
| gene | 82379 | 86648 |
| mRNA | 82379 | 86648 |
| exon | 82379 | 84118 |
| exon | 84314 | 84400 |
| exon | 84872 | 84963 |
| exon | 85075 | 85183 |
| exon | 85274 | 85309 |
| exon | 85454 | 85540 |
| exon | 85939 | 86648 |
| CDS | 84116 | 84118 |
| CDS | 84314 | 84400 |
| CDS | 84872 | 84963 |
| CDS | 85075 | 85183 |
| CDS | 85274 | 85309 |
| CDS | 85454 | 85540 |
| CDS | 85939 | 86010 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001232 | intracellular protein transport, small GTPase mediated signal transduction, GTP binding, intracellular, membrane coat, endoplasmic reticulum, protein transporter activity, |
| coexpression network | CFinderM001472 | Protein_processing_in_endoplasmic_reticulum COPI vesicle coat, membrane coat, endoplasmic reticulum, RLK-Pelle_LysM (from iTAK) Golgi-associated vesicle, structural molecule activity, cell redox homeostasis, vesicle-mediated transport, intracellular protein transport, retrograde vesicle-mediated transport, Golgi to ER, nucleotide_phosphorylation Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
| coexpression network | CFinderM001737 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), Golgi_transport_complex mTERF Transcription_Regulator(from iTAK) membrane coat, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, protein transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01217.19 | Clat_adaptor_s | 1 | 140 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006810 | transport |
| GO:0006886 | intracellular protein transport |
| GO:0008565 | protein transporter activity |
| GO:0015031 | protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.