PH01001315G0350's details annotation
1.Annotation
ICBR annotation: zinc knuckle domain containing protein, expressed
Blast result AT5G52380 : 1.30E-76
Blast annotation: VASCULAR-RELATED NAC-DOMAIN 6
2.Location
Scaffold: PH01001315
Strand: -
| Region | Start | End |
| gene | 189437 | 193641 |
| mRNA | 189437 | 193641 |
| exon | 189437 | 190392 |
| exon | 190909 | 191002 |
| exon | 191722 | 191813 |
| exon | 191931 | 192069 |
| exon | 192527 | 193641 |
| CDS | 190169 | 190392 |
| CDS | 190909 | 191002 |
| CDS | 191722 | 191813 |
| CDS | 191931 | 192069 |
| CDS | 192527 | 192805 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14392.5 | zf-CCHC_4 | 70 | 84 |
| PF14392.5 | zf-CCHC_4 | 93 | 109 |
| PF00098.22 | zf-CCHC | 120 | 135 |
| PF00098.22 | zf-CCHC | 147 | 162 |
| PF14392.5 | zf-CCHC_4 | 173 | 188 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.