Annotation of co-expression genes

PH01001315G0420's details annotation

1.Annotation

ICBR annotation: copper-transporting ATPase 3, putative, expressed

Blast result AT1G63440 : 0.00E+00
Blast annotation: heavy metal atpase 5

2.Location

Scaffold: PH01001315
Strand: +

RegionStartEnd
gene226027232248
mRNA226027232248
exon226027226593
exon227983229374
exon229461229715
exon229844229966
exon230063230539
exon230632232248
CDS226549226593
CDS227983229374
CDS229461229715
CDS229844229966
CDS230063230539
CDS230632231021

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00403.25HMA47107
PF00403.25HMA123179
PF00122.19E1-E2_ATPase350547
PF00702.25Hydrolase565787

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0006812cation transport
GO:0006825copper ion transport
GO:0016021integral to membrane
GO:0019829cation-transporting ATPase activity
GO:0030001metal ion transport
GO:0043682copper-transporting ATPase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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