PH01001317G0210's details annotation
1.Annotation
ICBR annotation: zinc finger helicase family protein, putative, expressed
Blast result AT2G47680 : 0.00E+00
Blast annotation: zinc finger (CCCH type) helicase family protein
2.Location
Scaffold: PH01001317
Strand: -
| Region | Start | End |
| gene | 114718 | 126753 |
| mRNA | 114718 | 126753 |
| exon | 114718 | 115283 |
| exon | 115572 | 116093 |
| exon | 116677 | 116724 |
| exon | 116836 | 117024 |
| exon | 117246 | 117324 |
| exon | 117494 | 117585 |
| exon | 117913 | 118029 |
| exon | 118107 | 118376 |
| exon | 119412 | 119485 |
| exon | 119865 | 120045 |
| exon | 120131 | 120277 |
| exon | 121064 | 121375 |
| exon | 122722 | 122869 |
| exon | 123013 | 123186 |
| exon | 124984 | 125170 |
| exon | 126100 | 126753 |
| CDS | 115038 | 115283 |
| CDS | 115572 | 116093 |
| CDS | 116677 | 116724 |
| CDS | 116836 | 117024 |
| CDS | 117246 | 117324 |
| CDS | 117494 | 117585 |
| CDS | 117913 | 118029 |
| CDS | 118107 | 118376 |
| CDS | 119412 | 119485 |
| CDS | 119865 | 120045 |
| CDS | 120131 | 120277 |
| CDS | 121064 | 121375 |
| CDS | 122722 | 122869 |
| CDS | 123013 | 123186 |
| CDS | 124984 | 125170 |
| CDS | 126100 | 126241 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00270.28 | DEAD | 28 | 182 |
| PF00271.30 | Helicase_C | 262 | 381 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.