PH01001319G0360's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT1G70210 : 2.50E-57
Blast annotation: CYCLIN D1;1
2.Location
Scaffold: PH01001319
Strand: -
| Region | Start | End |
| gene | 218605 | 223167 |
| mRNA | 218605 | 223167 |
| exon | 218605 | 218971 |
| exon | 219063 | 219203 |
| exon | 219809 | 220010 |
| exon | 220077 | 220172 |
| exon | 220939 | 221025 |
| exon | 221154 | 223167 |
| CDS | 218769 | 218971 |
| CDS | 219063 | 219203 |
| CDS | 219809 | 220010 |
| CDS | 220077 | 220172 |
| CDS | 220939 | 221025 |
| CDS | 221154 | 221414 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 80 | 176 |
| PF02984.18 | Cyclin_C | 180 | 239 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.