Annotation of co-expression genes

PH01001325G0220's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT5G25140 : 3.50E-89
Blast annotation: cytochrome P450, family 71, subfamily B, polypeptide 13

2.Location

Scaffold: PH01001325
Strand: -

RegionStartEnd
gene139164143813
mRNA139164143813
exon139164139861
exon141124141282
exon141361141459
exon143146143813
CDS139238139861
CDS141124141282
CDS141361141459
CDS143146143703

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000965YABBY Transcription_Regulator(from PlantTFDB)
C2C2-YABBY Transcription_Regulator(from iTAK)
coexpression networkCFinderM001033Arachidonic_acid_metabolism
Linoleic_acid_metabolism
electron carrier activity,
iron ion binding,
heme binding,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
galactosyltransferase activity,
bHLH Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45034493

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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