PH01001325G0580's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative
Blast result AT5G08305 : 2.00E-106
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001325
Strand: +
| Region | Start | End |
| gene | 354836 | 357855 |
| mRNA | 354836 | 357855 |
| exon | 354836 | 357855 |
| CDS | 356110 | 357273 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001584 | |
| coexpression network | CFinderM001629 | mRNA_surveillance_pathway peptide-methionine-(S)-S-oxide reductase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 24 | 53 |
| PF01535.19 | PPR | 55 | 81 |
| PF01535.19 | PPR | 133 | 153 |
| PF13041.5 | PPR_2 | 161 | 208 |
| PF01535.19 | PPR | 235 | 259 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.