Annotation of co-expression genes

PH01001327G0170's details annotation

1.Annotation

ICBR annotation: glutamate receptor, putative, expressed

Blast result AT1G05200 : 0
Blast annotation: glutamate receptor 3.4

2.Location

Scaffold: PH01001327
Strand: -

RegionStartEnd
gene160990167217
mRNA160990167217
exon160990161788
exon161869162275
exon162360162391
exon162597162760
exon162865164207
exon164881167217
CDS161351161788
CDS161869162275
CDS162360162391
CDS162597162760
CDS162865164207
CDS164881165100

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01094.27ANF_receptor33392
PF00497.19SBP_bac_3461756
PF00060.25Lig_chan574788

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004965G-protein coupled GABA receptor activity
GO:0004970ionotropic glutamate receptor activity
GO:0005215transporter activity
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0006810transport
GO:0007186G-protein coupled receptor signaling pathway
GO:0016020membrane
GO:0016021integral to membrane
GO:0030288outer membrane-bounded periplasmic space

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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