PH01001328G0500's details annotation
1.Annotation
ICBR annotation: male sterility protein, putative, expressed
Blast result AT3G11980 : 4.00E-149
Blast annotation: Jojoba acyl CoA reductase-related male sterility protein
2.Location
Scaffold: PH01001328
Strand: +
| Region | Start | End |
| gene | 298510 | 301940 |
| mRNA | 298510 | 301940 |
| exon | 298510 | 299124 |
| exon | 299226 | 299329 |
| exon | 299426 | 299625 |
| exon | 299712 | 299812 |
| exon | 299917 | 300130 |
| exon | 300258 | 300419 |
| exon | 300506 | 300587 |
| exon | 300642 | 300698 |
| exon | 300845 | 301940 |
| CDS | 298809 | 299124 |
| CDS | 299226 | 299329 |
| CDS | 299426 | 299625 |
| CDS | 299712 | 299812 |
| CDS | 299917 | 300130 |
| CDS | 300258 | 300419 |
| CDS | 300506 | 300587 |
| CDS | 300642 | 300698 |
| CDS | 300845 | 301312 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07993.11 | NAD_binding_4 | 96 | 394 |
| PF03015.18 | Sterile | 481 | 550 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.