PH01001329G0110's details annotation
1.Annotation
ICBR annotation: DEAD-box ATP-dependent RNA helicase, putative, expressed
Blast result AT3G16840 : 6.00E-131
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01001329
Strand: +
| Region | Start | End |
| gene | 109629 | 114658 |
| mRNA | 109629 | 114658 |
| exon | 109629 | 111216 |
| exon | 111396 | 111586 |
| exon | 111915 | 112109 |
| exon | 112371 | 112547 |
| exon | 113389 | 113777 |
| exon | 113913 | 114093 |
| exon | 114143 | 114658 |
| CDS | 110649 | 111216 |
| CDS | 111396 | 111586 |
| CDS | 111915 | 112109 |
| CDS | 112371 | 112547 |
| CDS | 113389 | 113777 |
| CDS | 113913 | 114093 |
| CDS | 114143 | 114193 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00270.28 | DEAD | 238 | 446 |
| PF00271.30 | Helicase_C | 512 | 581 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.