PH01001330G0530's details annotation
1.Annotation
ICBR annotation: transcription factor X1, putative, expressed
Blast result AT1G15910 : 6.00E-141
Blast annotation: XH/XS domain-containing protein
2.Location
Scaffold: PH01001330
Strand: -
| Region | Start | End |
| gene | 371901 | 379073 |
| mRNA | 371901 | 379073 |
| exon | 371901 | 373779 |
| exon | 374173 | 374385 |
| exon | 374523 | 374810 |
| exon | 374901 | 374990 |
| exon | 375266 | 375447 |
| exon | 375574 | 376494 |
| exon | 377757 | 377887 |
| exon | 378305 | 379073 |
| CDS | 373555 | 373779 |
| CDS | 374173 | 374385 |
| CDS | 374523 | 374810 |
| CDS | 374901 | 374990 |
| CDS | 375266 | 375447 |
| CDS | 375574 | 376494 |
| CDS | 377757 | 377887 |
| CDS | 378305 | 378339 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000461 | STE_STE11 (from iTAK) zinc_ion_transmembrane_transport cellular component organization, actin cytoskeleton organization, |
| coexpression network | CFinderM001495 | integral to Golgi membrane, intra-Golgi vesicle-mediated transport, cysteine metabolic process, STE_STE11 (from iTAK) Sulfur_relay_system Thiamine_metabolism cysteine desulfurase activity, |
| coexpression network | CFinderM001540 | DNA polymerase III complex, alpha-Linolenic_acid_metabolism Fatty_acid_metabolism Terpenoid_backbone_biosynthesis 3-hydroxyacyl-CoA_dehydrogenase_activity 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, peptide-methionine-(S)-S-oxide reductase activity, fatty acid metabolic process, terpenoid biosynthetic process, iron-sulfur cluster assembly, |
| coexpression network | CFinderM001663 | DNA polymerase III complex, GRAS Transcription_Regulator(from PlantTFDB) DNA_replication DNA-directed DNA polymerase activity, |
| coexpression network | CFinderM001715 | vacuolar proton-transporting V-type ATPase, V1 domain, RLK-Pelle_RLCK-VIIa-2 (from iTAK) STE_STE11 (from iTAK) ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001881 | cysteine metabolic process, Sulfur_relay_system Thiamine_metabolism cysteine desulfurase activity, microtubule associated complex, microtubule-based movement, |
| coexpression network | CFinderM001887 | microtubule organizing center, spindle pole, nuclear pore, microtubule cytoskeleton organization, C2H2 Transcription_Regulator(from PlantTFDB) RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03470.13 | zf-XS | 107 | 148 |
| PF03468.13 | XS | 177 | 285 |
| PF03469.13 | XH | 564 | 693 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.