PH01001333G0190's details annotation
1.Annotation
ICBR annotation: nifU, putative, expressed
Blast result AT5G49940 : 8.40E-74
Blast annotation: NIFU-like protein 2
2.Location
Scaffold: PH01001333
Strand: -
| Region | Start | End |
| gene | 93094 | 95898 |
| mRNA | 93094 | 95898 |
| exon | 93094 | 93340 |
| exon | 94423 | 94733 |
| exon | 95505 | 95589 |
| exon | 95698 | 95898 |
| CDS | 93149 | 93340 |
| CDS | 94423 | 94733 |
| CDS | 95505 | 95589 |
| CDS | 95698 | 95772 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01106.16 | NifU | 74 | 139 |
| PF01106.16 | NifU | 155 | 217 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0016226 | iron-sulfur cluster assembly |
| GO:0051536 | iron-sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.