Annotation of co-expression genes

PH01001337G0400's details annotation

1.Annotation

ICBR annotation: OsSCP12 - Putative Serine Carboxypeptidase homologue, expressed

Blast result AT3G63470 : 4.30E-85
Blast annotation: serine carboxypeptidase-like 40

2.Location

Scaffold: PH01001337
Strand: +

RegionStartEnd
gene302544315335
mRNA302544315335
exon302544303042
exon303581304104
exon304197304445
exon304510304628
exon304914305022
exon305093305158
exon307733307871
exon308316308396
exon308827309279
exon310233310331
exon310899311015
exon313540315335
CDS302679303042
CDS303581304104
CDS304197304445
CDS304510304628
CDS304914305022
CDS305093305158
CDS307733307871
CDS308316308396
CDS308827309279
CDS310233310331
CDS310899311015
CDS313540313781

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00450.21Peptidase_S1074157
PF00450.21Peptidase_S10205422

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004185serine-type carboxypeptidase activity
GO:0006508proteolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.