PH01001339G0500's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT3G15200 : 7.00E-116
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01001339
Strand: -
| Region | Start | End |
| gene | 295355 | 298100 |
| mRNA | 295355 | 298100 |
| exon | 295355 | 297244 |
| exon | 297447 | 298100 |
| CDS | 295695 | 297244 |
| CDS | 297447 | 297510 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 254 | 278 |
| PF12854.6 | PPR_1 | 283 | 313 |
| PF01535.19 | PPR | 325 | 353 |
| PF13041.5 | PPR_2 | 356 | 400 |
| PF01535.19 | PPR | 426 | 454 |
| PF01535.19 | PPR | 461 | 489 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.