PH01001339G0550's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G59960 : 2.00E-134
Blast annotation: -
2.Location
Scaffold: PH01001339
Strand: -
| Region | Start | End |
| gene | 323105 | 327961 |
| mRNA | 323105 | 327961 |
| exon | 323105 | 323648 |
| exon | 324136 | 324269 |
| exon | 324380 | 324443 |
| exon | 324545 | 324645 |
| exon | 324717 | 324771 |
| exon | 325023 | 325068 |
| exon | 325216 | 325298 |
| exon | 325747 | 325943 |
| exon | 326782 | 326866 |
| exon | 327438 | 327961 |
| CDS | 323460 | 323648 |
| CDS | 324136 | 324269 |
| CDS | 324380 | 324443 |
| CDS | 324545 | 324645 |
| CDS | 324717 | 324771 |
| CDS | 325023 | 325068 |
| CDS | 325216 | 325298 |
| CDS | 325747 | 325943 |
| CDS | 326782 | 326866 |
| CDS | 327438 | 327503 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.