Annotation of co-expression genes

PH01001340G0430's details annotation

1.Annotation

ICBR annotation: senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed

Blast result AT2G37050 : 0.00E+00
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01001340
Strand: -

RegionStartEnd
gene252374262058
mRNA252374262058
exon252374253191
exon253286253421
exon253549253732
exon253819253887
exon254359254485
exon256040256281
exon256357256508
exon257061257132
exon257216257284
exon257366257437
exon257524257656
exon257754258259
exon259282259816
exon260062262058
CDS252868253191
CDS253286253421
CDS253549253732
CDS253819253887
CDS254359254485
CDS256040256281
CDS256357256508
CDS257061257132
CDS257216257284
CDS257366257437
CDS257524257656
CDS257754258259
CDS259282259816
CDS260062260146

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12819.6Malectin_like33365
PF07714.16Pkinase_Tyr580848

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.