Annotation of co-expression genes

PH01001341G0150's details annotation

1.Annotation

ICBR annotation: AP2 domain containing protein, expressed

Blast result AT3G54320 : 2.00E-73
Blast annotation: Integrase-type DNA-binding superfamily protein

2.Location

Scaffold: PH01001341
Strand: -

RegionStartEnd
gene108944114717
mRNA108944114717
exon108944110304
exon111655111731
exon112665112789
exon113146113234
exon113753113838
exon114413114717
CDS109658110304
CDS111655111731
CDS112665112789
CDS113146113234
CDS113753113838
CDS114413114648

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001521Lipoic_acid_metabolism
NAK (from iTAK)
AP2/ERF-AP2 Transcription_Regulator(from iTAK)
chloroplast,
AP2 Transcription_Regulator(from PlantTFDB)
lipoate biosynthetic process,
RNA-directed RNA polymerase activity,
lipoate synthase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)AP2/ERF-AP2
Transcription_Regulator(from PlantTFDB)AP2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00847.19AP273129
PF00847.19AP2172223

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.