Annotation of co-expression genes

PH01001342G0420's details annotation

1.Annotation

ICBR annotation: ribonucleoside-diphosphate reductase small chain, putative, expressed

Blast result AT3G27060 : 4.00E-155
Blast annotation: Ferritin/ribonucleotide reductase-like family protein

2.Location

Scaffold: PH01001342
Strand: +

RegionStartEnd
gene299052300407
mRNA299052300407
exon299052300407
CDS299148300167

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00268.20Ribonuc_red_sm24291

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]ko00230K10808
Pyrimidine metabolismribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]ko00240K10808
Glutathione metabolismribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]ko00480K10808

10.Gene Ontology

GO AccessionGO Annotation
GO:0009186deoxyribonucleoside diphosphate metabolic process
GO:0016491oxidoreductase activity
GO:0046914transition metal ion binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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