Annotation of co-expression genes

PH01001344G0010's details annotation

1.Annotation

ICBR annotation: transmembrane 9 superfamily member, putative, expressed

Blast result AT1G14670 : 0.00E+00
Blast annotation: Endomembrane protein 70 protein family

2.Location

Scaffold: PH01001344
Strand: -

RegionStartEnd
gene1561823930
mRNA1561823930
exon1561816573
exon1665116807
exon1689317030
exon1711717608
exon1764317694
exon1781817858
exon1829818362
exon1852018975
exon1920119627
exon1981620436
exon2086322044
exon2214122640
exon2277023930
CDS1603716573
CDS1665116807
CDS1689317030
CDS1711717608
CDS1764317694
CDS1781817858
CDS1829818362
CDS1852018975
CDS1920119627
CDS1981620436
CDS2086322044
CDS2214122640
CDS2277023066

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000033galactonolactone_dehydrogenase_activity
coexpression networkCFinderM000820poly(ADP-ribose) glycohydrolase activity,
galactonolactone_dehydrogenase_activity

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08284.10RVP_2446545
PF02990.15EMP7011861641

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.