PH01001344G0500's details annotation
1.Annotation
ICBR annotation: tetraspanin family protein, putative, expressed
Blast result AT1G32400 : 7.70E-38
Blast annotation: tobamovirus multiplication 2A
2.Location
Scaffold: PH01001344
Strand: -
| Region | Start | End |
| gene | 365811 | 370638 |
| mRNA | 365811 | 370638 |
| exon | 365811 | 366062 |
| exon | 366148 | 366345 |
| exon | 367400 | 367504 |
| exon | 368436 | 368490 |
| exon | 369055 | 370638 |
| CDS | 365976 | 366062 |
| CDS | 366148 | 366345 |
| CDS | 367400 | 367504 |
| CDS | 368436 | 368490 |
| CDS | 369055 | 369287 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001062 | HSF Transcription_Regulator(from PlantTFDB) NAD+ kinase activity, diacylglycerol kinase activity, protein kinase C-activating G-protein coupled receptor signaling pathway, |
| coexpression network | CFinderM001327 | |
| coexpression network | CFinderM001682 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis sterol_24-C-methyltransferase_activity steroid biosynthetic process, single-stranded DNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.