PH01001345G0340's details annotation
1.Annotation
ICBR annotation: powdery mildew resistant protein 5, putative, expressed
Blast result AT4G01080 : 1.00E-116
Blast annotation: TRICHOME BIREFRINGENCE-LIKE 26
2.Location
Scaffold: PH01001345
Strand: -
| Region | Start | End |
| gene | 259016 | 266620 |
| mRNA | 259016 | 266620 |
| exon | 259016 | 260411 |
| exon | 261170 | 261447 |
| exon | 261613 | 261690 |
| exon | 261921 | 261998 |
| exon | 262943 | 263096 |
| exon | 263361 | 263502 |
| exon | 264745 | 266620 |
| CDS | 259635 | 260411 |
| CDS | 261170 | 261447 |
| CDS | 261613 | 261690 |
| CDS | 261921 | 261998 |
| CDS | 262943 | 263096 |
| CDS | 263361 | 263502 |
| CDS | 264745 | 264983 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 232 | 284 |
| PF13839.5 | PC-Esterase | 285 | 577 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.