PH01001350G0200's details annotation
1.Annotation
ICBR annotation: homeobox and START domains containing protein, putative, expressed
Blast result AT4G04890 : 0.00E+00
Blast annotation: protodermal factor 2
2.Location
Scaffold: PH01001350
Strand: +
| Region | Start | End |
| gene | 123419 | 129026 |
| mRNA | 123419 | 129026 |
| exon | 123419 | 124366 |
| exon | 124450 | 124567 |
| exon | 125161 | 125598 |
| exon | 126101 | 126262 |
| exon | 126385 | 126843 |
| exon | 126938 | 127039 |
| exon | 127207 | 127407 |
| exon | 127553 | 127727 |
| exon | 127835 | 128106 |
| exon | 128212 | 128307 |
| exon | 128431 | 129026 |
| CDS | 124200 | 124366 |
| CDS | 124450 | 124567 |
| CDS | 125161 | 125598 |
| CDS | 126101 | 126262 |
| CDS | 126385 | 126843 |
| CDS | 126938 | 127039 |
| CDS | 127207 | 127407 |
| CDS | 127553 | 127727 |
| CDS | 127835 | 128106 |
| CDS | 128212 | 128307 |
| CDS | 128431 | 128820 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 40 | 95 |
| PF01852.18 | START | 371 | 592 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.