PH01001350G0210's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G04885 : 1.40E-73
Blast annotation: PCF11P-similar protein 4
2.Location
Scaffold: PH01001350
Strand: -
| Region | Start | End |
| gene | 135424 | 143208 |
| mRNA | 135424 | 143208 |
| exon | 135424 | 136437 |
| exon | 136548 | 137483 |
| exon | 138324 | 139040 |
| exon | 140551 | 140664 |
| exon | 140851 | 141216 |
| exon | 142459 | 142521 |
| exon | 142690 | 143208 |
| CDS | 135919 | 136437 |
| CDS | 136548 | 137483 |
| CDS | 138324 | 139040 |
| CDS | 140551 | 140664 |
| CDS | 140851 | 141216 |
| CDS | 142459 | 142521 |
| CDS | 142690 | 142929 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000701 | nucleotide kinase activity, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor, nucleobase-containing compound kinase activity, |
| coexpression network | CFinderM001455 | Amino_sugar_and_nucleotide_sugar_metabolism CAMK_CDPK (from iTAK) carbohydrate phosphorylation, mitochondrial electron transport, ubiquinol to cytochrome c, galactose metabolic process, ubiquinol-cytochrome-c reductase activity, galactokinase activity, |
| coexpression network | CFinderM001550 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), oxidoreductase activity, hydrogen ion transmembrane transporter activity, ATP synthesis coupled proton transport, |
| coexpression network | CFinderM001867 | Pseudo ARR-B Transcription_Regulator(from iTAK) Riboflavin_metabolism GTP cyclohydrolase II activity, 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, mRNA_surveillance_pathway riboflavin biosynthetic process, protein catabolic process, two-component signal transduction system (phosphorelay), |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04818.12 | CTD_bind | 107 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | pre-mRNA cleavage complex 2 protein Pcf11 | ko03015 | K14400 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.