PH01001350G0310's details annotation
1.Annotation
ICBR annotation: phosphate/phosphate translocator, putative, expressed
Blast result AT1G61800 : 3.00E-149
Blast annotation: glucose-6-phosphate/phosphate translocator 2
2.Location
Scaffold: PH01001350
Strand: +
| Region | Start | End |
| gene | 202398 | 209141 |
| mRNA | 202398 | 209141 |
| exon | 202398 | 204481 |
| exon | 205545 | 205636 |
| exon | 206451 | 206944 |
| exon | 207036 | 207261 |
| exon | 207891 | 208113 |
| exon | 208431 | 208644 |
| exon | 208726 | 209141 |
| CDS | 204285 | 204481 |
| CDS | 205545 | 205636 |
| CDS | 206451 | 206944 |
| CDS | 207036 | 207261 |
| CDS | 207891 | 208113 |
| CDS | 208431 | 208644 |
| CDS | 208726 | 208752 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001186 | Valine,_leucine_and_isoleucine_degradation Glycine,_serine_and_threonine_metabolism Zeatin_biosynthesis intramolecular transferase activity, phosphotransferases, oxoglutarate dehydrogenase (succinyl-transferring) activity, dihydrolipoyl dehydrogenase activity, sucrose synthase activity, thiamine pyrophosphate binding, oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, mitochondrial outer membrane, |
| coexpression network | CFinderM001588 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation dihydrolipoyl dehydrogenase activity, oxoglutarate dehydrogenase (succinyl-transferring) activity, oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor thiamine pyrophosphate binding, mitochondrial outer membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03151.15 | TPT | 192 | 481 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.