PH01001352G0180's details annotation
1.Annotation
ICBR annotation: erythronate-4-phosphate dehydrogenase domain containing protein, expressed
Blast result AT5G40470 : 6.40E-47
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01001352
Strand: +
| Region | Start | End |
| gene | 176058 | 179735 |
| mRNA | 176058 | 179735 |
| exon | 176058 | 177384 |
| exon | 177454 | 179735 |
| CDS | 176895 | 177384 |
| CDS | 177454 | 178388 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.