Annotation of co-expression genes

PH01001353G0420's details annotation

1.Annotation

ICBR annotation: plastidic ATP/ADP-transporter, putative, expressed

Blast result AT1G80300 : 0
Blast annotation: nucleotide transporter 1

2.Location

Scaffold: PH01001353
Strand: -

RegionStartEnd
gene307906312604
mRNA307906312604
exon307906308302
exon310513310860
exon310947311090
exon311173311439
exon311695312604
CDS307913308302
CDS310513310860
CDS310947311090
CDS311173311439
CDS311695312120

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000863MADS-M-type Transcription_Regulator(from iTAK)
M-type_MADS Transcription_Regulator(from PlantTFDB)
COPII vesicle coat,
ATP:ADP antiporter activity,
ER to Golgi vesicle-mediated transport,
endoplasmic reticulum,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03219.13TLC1457

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005471ATP:ADP antiporter activity
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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