PH01001358G0530's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G26330 : 1.30E-24
Blast annotation: DNA binding
2.Location
Scaffold: PH01001358
Strand: -
| Region | Start | End |
| gene | 364387 | 373181 |
| mRNA | 364387 | 373181 |
| exon | 364387 | 364703 |
| exon | 365178 | 365293 |
| exon | 367028 | 367375 |
| exon | 367899 | 367950 |
| exon | 368248 | 368287 |
| exon | 368368 | 369371 |
| exon | 369411 | 369576 |
| exon | 369644 | 369729 |
| exon | 369931 | 370104 |
| exon | 370632 | 370671 |
| exon | 370752 | 371764 |
| exon | 371804 | 372163 |
| exon | 372384 | 372564 |
| exon | 373080 | 373181 |
| CDS | 364567 | 364703 |
| CDS | 365178 | 365293 |
| CDS | 367028 | 367375 |
| CDS | 367899 | 367950 |
| CDS | 368248 | 368287 |
| CDS | 368368 | 369371 |
| CDS | 369411 | 369576 |
| CDS | 369644 | 369729 |
| CDS | 369931 | 370104 |
| CDS | 370632 | 370671 |
| CDS | 370752 | 371764 |
| CDS | 371804 | 372163 |
| CDS | 372384 | 372564 |
| CDS | 373080 | 373181 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000240 | RLK-Pelle_RLCK-VIII (from iTAK) integral_component_of_peroxisomal_membrane peroxisome_fission 3-oxoacyl-[acyl-carrier-protein] synthase activity, Fatty_acid_biosynthesis lipid biosynthetic process, cellular protein modification process, Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.