PH01001359G0220's details annotation
1.Annotation
ICBR annotation: pelota, putative, expressed
Blast result AT4G27650 : 5.00E-112
Blast annotation: Eukaryotic release factor 1 (eRF1) family protein
2.Location
Scaffold: PH01001359
Strand: -
| Region | Start | End |
| gene | 174850 | 181573 |
| mRNA | 174850 | 181573 |
| exon | 174850 | 175123 |
| exon | 175372 | 175478 |
| exon | 175712 | 175806 |
| exon | 175973 | 176011 |
| exon | 176182 | 176254 |
| exon | 176688 | 176794 |
| exon | 177452 | 177520 |
| exon | 177611 | 177643 |
| exon | 177729 | 177804 |
| exon | 178246 | 178321 |
| exon | 178885 | 178930 |
| exon | 179668 | 179744 |
| exon | 180064 | 180269 |
| exon | 180799 | 181573 |
| CDS | 175050 | 175123 |
| CDS | 175372 | 175478 |
| CDS | 175712 | 175806 |
| CDS | 175973 | 176011 |
| CDS | 176182 | 176254 |
| CDS | 176688 | 176794 |
| CDS | 177452 | 177520 |
| CDS | 177611 | 177643 |
| CDS | 177729 | 177804 |
| CDS | 178246 | 178321 |
| CDS | 178885 | 178930 |
| CDS | 179668 | 179744 |
| CDS | 180064 | 180269 |
| CDS | 180799 | 180941 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03464.14 | eRF1_2 | 165 | 296 |
| PF03465.14 | eRF1_3 | 300 | 398 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein pelota | ko03015 | K06965 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.