Annotation of co-expression genes

PH01001360G0530's details annotation

1.Annotation

ICBR annotation: ethylene-responsive transcription factor, putative, expressed

Blast result AT4G39780 : 2.30E-37
Blast annotation: Integrase-type DNA-binding superfamily protein

2.Location

Scaffold: PH01001360
Strand: -

RegionStartEnd
gene310926312243
mRNA310926312243
exon310926311733
exon311789312243
CDS311182311733
CDS311789312043

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000342ERF Transcription_Regulator(from PlantTFDB)
AP2/ERF-ERF Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)AP2/ERF-ERF
Transcription_Regulator(from PlantTFDB)ERF

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00847.19AP295143

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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