PH01001361G0040's details annotation
1.Annotation
ICBR annotation: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed
Blast result AT1G17720 : 0.00E+00
Blast annotation: Protein phosphatase 2A, regulatory subunit PR55
2.Location
Scaffold: PH01001361
Strand: -
| Region | Start | End |
| gene | 40334 | 47671 |
| mRNA | 40334 | 47671 |
| exon | 40334 | 41151 |
| exon | 41220 | 41287 |
| exon | 41511 | 41588 |
| exon | 41672 | 41763 |
| exon | 41878 | 41946 |
| exon | 42477 | 42600 |
| exon | 42747 | 42870 |
| exon | 43249 | 43367 |
| exon | 44153 | 44244 |
| exon | 44458 | 44604 |
| exon | 45021 | 45140 |
| exon | 45226 | 45321 |
| exon | 45440 | 45543 |
| exon | 47029 | 47671 |
| CDS | 41015 | 41151 |
| CDS | 41220 | 41287 |
| CDS | 41511 | 41588 |
| CDS | 41672 | 41763 |
| CDS | 41878 | 41946 |
| CDS | 42477 | 42600 |
| CDS | 42747 | 42870 |
| CDS | 43249 | 43367 |
| CDS | 44153 | 44244 |
| CDS | 44458 | 44604 |
| CDS | 45021 | 45140 |
| CDS | 45226 | 45321 |
| CDS | 45440 | 45543 |
| CDS | 47029 | 47158 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001112 | protein phosphatase type 2A complex, GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity glycolipid_6-alpha-mannosyltransferase_activity C3H Transcription_Regulator(from PlantTFDB) protein phosphatase type 2A regulator activity, mRNA_surveillance_pathway Proteasome protein catabolic process, |
| coexpression network | CFinderM001421 | protein catabolic process, Proteasome Glycine,_serine_and_threonine_metabolism protein phosphatase type 2A complex, cytoplasm, protein phosphatase type 2A regulator activity, Rab GDP-dissociation inhibitor activity, nucleoside-triphosphatase activity, hydrolase activity, |
| coexpression network | CFinderM001763 | protein phosphatase type 2A complex, CMGC_MAPK (from iTAK) mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 211 | 247 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 2 (formerly 2A), regulatory subunit B | ko03015 | K04354 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000159 | protein phosphatase type 2A complex |
| GO:0005515 | protein binding |
| GO:0007165 | signal transduction |
| GO:0008601 | protein phosphatase type 2A regulator activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.