Annotation of co-expression genes

PH01001365G0210's details annotation

1.Annotation

ICBR annotation: 12-oxophytodienoate reductase, putative, expressed

Blast result AT1G76680 : 8.00E-140
Blast annotation: 12-oxophytodienoate reductase 1

2.Location

Scaffold: PH01001365
Strand: -

RegionStartEnd
gene120356123569
mRNA120356123569
exon120356121076
exon121272121445
exon122843123114
exon123397123569
CDS120481121076
CDS121272121445
CDS122843123114
CDS123397123422

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001610Sphingolipid_metabolism
alpha-Linolenic_acid_metabolism
carboxylic acid metabolic process,
catalytic activity,
carboxy-lyase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00724.19Oxidored_FMN2328

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
alpha-Linolenic acid metabolism12-oxophytodienoic acid reductase [EC:1.3.1.42]ko00592K05894

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0010181FMN binding
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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