PH01001366G0480's details annotation
1.Annotation
ICBR annotation: peptidyl-prolyl cis-trans isomerase, putative, expressed
Blast result AT1G26940 : 3.70E-79
Blast annotation: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
2.Location
Scaffold: PH01001366
Strand: +
| Region | Start | End |
| gene | 344623 | 351138 |
| mRNA | 344623 | 351138 |
| exon | 344623 | 346246 |
| exon | 347133 | 347246 |
| exon | 347357 | 347505 |
| exon | 347781 | 347853 |
| exon | 347933 | 348022 |
| exon | 348397 | 348436 |
| exon | 349445 | 349527 |
| exon | 350675 | 350746 |
| exon | 351031 | 351138 |
| CDS | 346037 | 346246 |
| CDS | 347133 | 347246 |
| CDS | 347357 | 347505 |
| CDS | 347781 | 347853 |
| CDS | 347933 | 348022 |
| CDS | 348397 | 348436 |
| CDS | 349445 | 349527 |
| CDS | 350675 | 350746 |
| CDS | 351031 | 351051 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00160.20 | Pro_isomerase | 71 | 219 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
| GO:0006457 | protein folding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.