PH01001372G0320's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G38580 : 7.30E-24
Blast annotation: Mitochondrial ATP synthase D chain-related protein
2.Location
Scaffold: PH01001372
Strand: +
| Region | Start | End |
| gene | 263832 | 275479 |
| mRNA | 263832 | 275479 |
| exon | 263832 | 264419 |
| exon | 264996 | 265142 |
| exon | 265658 | 265771 |
| exon | 266228 | 266290 |
| exon | 266452 | 266514 |
| exon | 266877 | 266939 |
| exon | 267061 | 267120 |
| exon | 267399 | 267536 |
| exon | 268270 | 268359 |
| exon | 268629 | 269030 |
| exon | 269273 | 269347 |
| exon | 272343 | 272441 |
| exon | 273762 | 273903 |
| exon | 274514 | 274557 |
| exon | 274840 | 274956 |
| exon | 275168 | 275479 |
| CDS | 264009 | 264419 |
| CDS | 264996 | 265142 |
| CDS | 265658 | 265771 |
| CDS | 266228 | 266290 |
| CDS | 266452 | 266514 |
| CDS | 266877 | 266939 |
| CDS | 267061 | 267120 |
| CDS | 267399 | 267536 |
| CDS | 268270 | 268359 |
| CDS | 268629 | 269030 |
| CDS | 269273 | 269347 |
| CDS | 272343 | 272441 |
| CDS | 273762 | 273903 |
| CDS | 274514 | 274557 |
| CDS | 274840 | 274956 |
| CDS | 275168 | 275287 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00862.18 | Sucrose_synth | 638 | 676 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005985 | sucrose metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.