PH01001375G0450's details annotation
1.Annotation
ICBR annotation: structural constituent of ribosome, putative, expressed
Blast result AT3G23590 : 4.00E-88
Blast annotation: REF4-related 1
2.Location
Scaffold: PH01001375
Strand: +
| Region | Start | End |
| gene | 349048 | 357612 |
| mRNA | 349048 | 357612 |
| exon | 349048 | 349551 |
| exon | 349686 | 349796 |
| exon | 351470 | 351794 |
| exon | 352500 | 352619 |
| exon | 353111 | 353432 |
| exon | 353534 | 353729 |
| exon | 353842 | 353875 |
| exon | 354123 | 354281 |
| exon | 354456 | 355119 |
| exon | 357124 | 357333 |
| exon | 357482 | 357612 |
| CDS | 349259 | 349551 |
| CDS | 349686 | 349796 |
| CDS | 351470 | 351794 |
| CDS | 352500 | 352619 |
| CDS | 353111 | 353432 |
| CDS | 353534 | 353729 |
| CDS | 353842 | 353875 |
| CDS | 354123 | 354281 |
| CDS | 354456 | 355119 |
| CDS | 357124 | 357333 |
| CDS | 357482 | 357552 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001408 | outer membrane, peptide-methionine-(S)-S-oxide reductase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.