PH01001379G0200's details annotation
1.Annotation
ICBR annotation: importin subunit beta, putative, expressed
Blast result AT3G08947 : 0.00E+00
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01001379
Strand: -
| Region | Start | End |
| gene | 207283 | 211356 |
| mRNA | 207283 | 211356 |
| exon | 207283 | 207577 |
| exon | 207662 | 211356 |
| CDS | 207382 | 207577 |
| CDS | 207662 | 210072 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001511 | nuclear pore, nucleocytoplasmic transport, RNA processing, Ribosome_biogenesis_in_eukaryotes RNA_transport |
| coexpression network | CFinderM001544 | RLK-Pelle_LRR-VI-2 (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) nuclear pore, RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03810.18 | IBN_N | 21 | 101 |
| PF13513.5 | HEAT_EZ | 380 | 435 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | importin subunit beta-1 | ko03013 | K14293 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005643 | nuclear pore |
| GO:0006886 | intracellular protein transport |
| GO:0006913 | nucleocytoplasmic transport |
| GO:0008565 | protein transporter activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.