PH01001382G0170's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT2G41900 : 5.90E-74
Blast annotation: CCCH-type zinc finger protein with ARM repeat domain
2.Location
Scaffold: PH01001382
Strand: +
| Region | Start | End |
| gene | 102142 | 104899 |
| mRNA | 102142 | 104899 |
| exon | 102142 | 103273 |
| exon | 103786 | 104899 |
| CDS | 102505 | 103273 |
| CDS | 103786 | 104657 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.