PH01001382G0320's details annotation
1.Annotation
ICBR annotation: PHD-finger family protein, expressed
Blast result AT4G10940 : 5.30E-14
Blast annotation: RING/U-box protein
2.Location
Scaffold: PH01001382
Strand: +
| Region | Start | End |
| gene | 181005 | 185477 |
| mRNA | 181005 | 185477 |
| exon | 181005 | 181500 |
| exon | 181647 | 182787 |
| exon | 183569 | 185477 |
| CDS | 181265 | 181500 |
| CDS | 181647 | 182787 |
| CDS | 183569 | 184615 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000554 | EIL Transcription_Regulator(from PlantTFDB) GT20 GlycosylTransferases STE_STE11 (from iTAK) PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | PHD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 386 | 429 |
| PF00628.28 | PHD | 480 | 525 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.